humanCAT The human ENCODE ChIP Association Tester
humanCAT allows you to easily compare your human (hg19) ChIP peaks from your peak-called BED file with those from most all human ENCODE ChIP peaks from Tier 1 and Tier 2 cell lines.
Peaks that share significantly common genomic binding sites score highly, allowing easy identification of proteins that show similar or identical genomic distributions from those that are distinct.
To use humanCAT
- Select below the tissue(s) of interest.
- Datasets of ChIP'd proteins with pre-computed data available for these tissues can then be selected for analysis.
- Finally, you can simply obtain the association data selected, or upload your own hg19-mapped BED file.